Do you still need a solution for this?
remove <?php $this->loadBlock('mainnav') ?> from default.php
add to header.php
<header id="t3-header" class="container t3-header">
<div class="row">
<!-- LOGO -->
<div class="col-xs-12 <?php echo $logosize ?> logo">
<div class="logo-<?php echo $logotype, ($logoimgsm ? ' logo-control' : '') ?>">
<a href="/<?php echo JURI::base(true) ?>" title="<?php echo strip_tags($sitename) ?>">
<?php if($logotype == 'image'): ?>
<img class="logo-img" src="/<?php echo JURI::base(true) . '/' . $logoimage ?>" alt="<?php echo strip_tags($sitename) ?>" />
<?php endif ?>
<?php if($logoimgsm) : ?>
<img class="logo-img-sm" src="/<?php echo JURI::base(true) . '/' . $logoimgsm ?>" alt="<?php echo strip_tags($sitename) ?>" />
<?php endif ?>
<span><?php echo $sitename ?></span>
</a>
<small class="site-slogan"><?php echo $slogan ?></small>
</div>
</div>
<!-- //LOGO -->
<div class="col-xs-12 col-sm-8">
<?php $this->loadBlock('mainnav') ?>
</div>
</div>
</header>
modify mainnav.php
change <div class="container"> to <div class="row2">